Heavy metal soil pollution plant mycobiome: impacts on ecosystem and certification Original paper

Researched by:

  • Dr. Umar Aitsaam ID
    Dr. Umar Aitsaam

    User avatarClinical Pharmacist and Master’s student in Clinical Pharmacy with research interests in pharmacovigilance, behavioral interventions in mental health, and AI applications in clinical decision support. Experience includes digital health research with Bloomsbury Health (London) and pharmacovigilance practice in patient support programs. Published work covers drug awareness among healthcare providers, postpartum depression management, and patient safety reporting.

    Read More

October 4, 2025

Researched by:

  • Dr. Umar Aitsaam ID
    Dr. Umar Aitsaam

    User avatarClinical Pharmacist and Master’s student in Clinical Pharmacy with research interests in pharmacovigilance, behavioral interventions in mental health, and AI applications in clinical decision support. Experience includes digital health research with Bloomsbury Health (London) and pharmacovigilance practice in patient support programs. Published work covers drug awareness among healthcare providers, postpartum depression management, and patient safety reporting.

    Read More

Last Updated: 2025-10-04

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Dr. Umar Aitsaam

Clinical Pharmacist and Master’s student in Clinical Pharmacy with research interests in pharmacovigilance, behavioral interventions in mental health, and AI applications in clinical decision support. Experience includes digital health research with Bloomsbury Health (London) and pharmacovigilance practice in patient support programs. Published work covers drug awareness among healthcare providers, postpartum depression management, and patient safety reporting.

What was studied?

This original research article investigated how metal soil pollution alters the plant mycobiome, focusing specifically on fungal communities associated with Arabidopsis arenosa in a heavy metal-polluted area compared to a non-polluted environment. The study’s central aim was to discern whether the presence of toxic metals in soils impacts the biodiversity and structure of both soil and plant-associated fungi, and whether these changes are driven by modifications in the pool of available microorganisms in the environment or by altered interactions and preferences between plants and fungi. Control and polluted sites were characterized chemically and floristically, and both bulk soil and plant tissues (roots and shoots) were sampled to analyze fungal diversity and abundance. The study also tested the growth and tolerance of selected endophytic fungal strains to toxic metals in vitro, providing mechanistic insights into observed field patterns.

Who was studied?

The study focused on Arabidopsis arenosa, a pseudometallophyte species found in both metalliferous and non-metalliferous soils, making it an ideal model for examining plant adaptation to heavy metal stress. Two main populations of A. arenosa were sampled: one from the Bolesław mine dump in Poland, a site with high contamination by Zn, Pb, Cd, and Fe due to mining activities, and a reference population from a non-polluted ruderal area in Alwernia, Poland, approximately 40 km away. For each site, six samples were collected, each composed of nine plants, resulting in 54 plants per site. Soil samples were collected from the same clusters as the plants. In the laboratory, synthetic communities of endophytic fungi isolated from A. arenosa were used to inoculate plants grown in controlled media with and without added toxic metals. The study thus included both natural field populations and controlled experimental groups to validate field observations and probe causative mechanisms.

Most important findings

Key FindingsRelevance to Heavy Metal Certification Programs
Plant and fungal biodiversity were significantly lower in the polluted site: 54 plant species (polluted) vs 102 (control); fungal class/genus richness in soil reduced by 12%/25%.Provides a clear chemical context for regulatory thresholds and risk assessment in certification programs.
Plant and fungal biodiversity was significantly lower in the polluted site: 54 plant species (polluted) vs 102 (control); fungal class/genus richness in soil reduced by 12%/25%.Demonstrates biodiversity loss as a measurable ecological impact of heavy metal pollution, supporting the need for environmental monitoring in certification.
The core soil mycobiome was stable across sites, with dominant taxa (mainly Ascomycota and Dothideomycetes) resistant to metal toxicity; differences arose mainly from loss of rare taxa.Indicates that certification programs should not focus solely on dominant microorganisms but also account for rare taxa as indicators of ecosystem health.
The structure of the plant mycobiome, especially the endophytic fungal community in A. arenosa, was significantly altered by metal pollution, even though overall taxonomic richness did not change.Highlights the importance of community structure and functional diversity, not just species counts, in certification and risk assessment.
Basidiomycota (notably Agaricomycetes) were particularly sensitive to metal toxicity, with their abundance in roots and shoots strongly reduced in polluted environments and laboratory assays.Identifies specific fungal groups as sensitive bioindicators, valuable for certification schemes to flag ecosystem disturbance.
Soil contaminated with heavy metals (Zn, Pb, Cd, Fe) had dramatically higher metal content and lower pH than the control.Underlines the need for certification protocols to consider not only chemical analysis but also biological interactions and functional assessments.
Metal toxicity did not directly reduce the pool of soil microorganisms available for plant recruitment but affected which fungi were able to colonize plants, mainly by altering plant and fungal behaviors and symbiotic preferences.Suggests that certification should include plant-microbe interaction studies to fully assess the impact of soil contamination.

Key implications

The study reveals that heavy metal pollution alters plant-associated fungal communities mainly by changing symbiotic interactions rather than just depleting soil fungal diversity. Certification programs should integrate both chemical and biological assessments, focusing on sensitive bioindicator taxa and the functional dynamics of plant-microbe relationships to ensure a comprehensive evaluation of ecosystem health under heavy metal stress.

Citation

Ważny R, Jędrzejczyk RJ, Domka A, Pliszko A, Kosowicz W, Githae D, Rozpądek P. How does metal soil pollution change the plant mycobiome? Environmental Microbiology. 2023;25(12):2913–2930. doi:10.1111/1462-2920.16392

Lead (Pb)

Lead is a neurotoxic heavy metal with no safe exposure level. It contaminates food, consumer goods and drinking water, causing cognitive deficits, birth defects and cardiovascular disease. HMTC’s rigorous lead testing applies ALARA principles to protect infants and consumers and to prepare brands for tightening regulations.

Cadmium (Cd)

Cadmium is a persistent heavy metal that accumulates in kidneys and bones. Dietary sources include cereals, cocoa, shellfish and vegetables, while smokers and industrial workers receive higher exposures. Studies link cadmium to kidney dysfunction, bone fractures and cancer.

Heavy Metals

Heavy metals are high-density elements that accumulate in the body and environment, disrupting biological processes. Lead, cadmium, arsenic, mercury, nickel, tin, aluminum, and chromium are of greatest concern due to persistence, bioaccumulation, and health risks, making them central to the HMTC program’s safety standards.